Solid and Aqueous Speciation of Yttrium in Passive Remediation Systems of Acid Mine Drainage

International audienceYttrium belongs to the rare earth elements (REEs) together with lanthanides and scandium. REEs are commonly used in modern technologies, and their limited supply has made it necessary to look for new alternative resources. Acid mine drainage (AMD) is a potential resource since it is moderately enriched in REEs. In fact, in passive remediation systems, which are implemented to minimize the environmental impacts of AMD, REEs are mainly retained in basaluminite, an aluminum hydroxysulfate precipitate. In this study, the solid and liquid speciation and the local structure of yttrium are studied in high-sulfate aqueous solutions, basaluminite standards, and samples from remediation columns using synchrotron-based techniques and molecular modeling. Pair distribution function (PDF) analyses and ab initio molecular dynamics density functional theory models of the yttrium sulfate solution show that the YSO4+ ion pair forms a monodentate inner-sphere complex. Extended X-ray absorption fine structure (EXAFS) and PDF analyses show that Y is retained by basaluminite, forming a monodentate inner-sphere surface complex on the aluminum hydroxide surface. EXAFS of the column samples shows that more than 72% of their signal is represented by the signal of basaluminite with which YSO4+ forms an inner-sphere complex. The atomic view of the REE configuration in AMD environments could facilitate a deeper research of REE recovery from waste generated in AMD remediation systems

Effects of livestock pressure and vegetation cover on the spatial and temporal structure of soil microarthropod communities in Iberian rangelands

Forests, including their soils, play an important role since they represent a large reservoir of biodiversity. Current studies show that the diversity of soil fauna provides multiple ecosystem functions and services across biomes. However, anthropogenic practices often pose a threat to soil fauna because of changes in land use and soil mismanagement. In these terms, rangelands in the southwest of Spain present several problems of soil degradation related to livestock activity and soil erosion, the intensity of which compromises the soil fauna's functions in the ecosystem. Therefore, the aim of this study is to evaluate the response of community metrics and the spatial distribution of soil microarthropods to livestock activity and vegetation in such ecosystems. A photo interpretation analysis of an experimental catchment used as a study area was developed to identify and classify the intensity of livestock pressure. A total of 150 soil samples were collected throughout 2018. Soil biological (CO2 efflux) and physical-chemical parameters (pH, bulk density, organic matter, and water contents), and such meteorological variables as precipitation, temperature, and evapotranspiration were considered as variables affecting the composition of microarthropod communities in terms of taxa diversity, abundances, and their adaptation to soil environment (evaluated by QBS-ar index). Results showed higher abundance of microarthropods and higher adaptation to soil environment outside the influence of trees rather than beneath tree canopies. Moreover, the classification of livestock pressure revealed by the photo interpretation analysis showed low correlations with community structure, as well as with the occurrence of well-adapted microarthropod groups that were found less frequently in areas with evidence of intense livestock activity. Furthermore, abundances and adaptations followed different spatial patterns. Due to future climate changes and increasing anthropogenic pressure, it is necessary to continue the study of soil fauna communities to determine their degree of sensitivity to such changes

Functional and molecular characterization of inherited platelet disorders in the Iberian Peninsula: results from a collaborative study

BACKGROUND: The diagnostic evaluation of inherited platelet disorders (IPDs) is complicated and time-consuming, resulting in a relevant number of undiagnosed and incorrectly classified patients. In order to evaluate the spectrum of IPDs in individuals with clinical suspicion of these disorders, and to provide a diagnostic tool to centers not having access to specific platelets studies, we established the project "Functional and Molecular Characterization of Patients with Inherited Platelet Disorders" under the scientific sponsorship of the Spanish Society of Thrombosis and Haemostasis. PATIENTS/METHODS: Subjects were patients from a prospective cohort of individuals referred for clinical suspicion of IPDs as well as healthy controls. Functional studies included light transmission aggregation, flow cytometry, and when indicated, Western-blot analysis of platelet glycoproteins, and clot retraction analysis. Genetic analysis was mainly performed by sequencing of coding regions and proximal regulatory regions of the genes of interest. RESULTS: Of the 70 cases referred for study, we functionally and molecularly characterized 12 patients with Glanzmann Thrombasthenia, 8 patients with Bernard Soulier syndrome, and 8 with other forms of IPDs. Twelve novel mutations were identified among these patients. The systematic study of patients revealed that almost one-third of patients had been previously misdiagnosed. CONCLUSIONS: Our study provides a global picture of the current limitations and access to the diagnosis of IPDs, identifies and confirms new genetic variants that cause these disorders, and emphasizes the need of creating reference centers that can help health care providers in the recognition of these defects

Texture analysis in gel electrophoresis images using an integrative kernel-based approach

[Abstract] Texture information could be used in proteomics to improve the quality of the image analysis of proteins separated on a gel. In order to evaluate the best technique to identify relevant textures, we use several different kernel-based machine learning techniques to classify proteins in 2-DE images into spot and noise. We evaluate the classification accuracy of each of these techniques with proteins extracted from ten 2-DE images of different types of tissues and different experimental conditions. We found that the best classification model was FSMKL, a data integration method using multiple kernel learning, which achieved AUROC values above 95% while using a reduced number of features. This technique allows us to increment the interpretability of the complex combinations of textures and to weight the importance of each particular feature in the final model. In particular the Inverse Difference Moment exhibited the highest discriminating power. A higher value can be associated with an homogeneous structure as this feature describes the homogeneity; the larger the value, the more symmetric. The final model is performed by the combination of different groups of textural features. Here we demonstrated the feasibility of combining different groups of textures in 2-DE image analysis for spot detection.Instituto de Salud Carlos III; PI13/00280United Kingdom. Medical Research Council; G10000427, MC_UU_12013/8Galicia. Consellería de Economía e Industria; 10SIN105004P

Las nociones de calidad percibidas por productores queseros de Tandil, Argentina: diversidad de estrategias y tensiones en procesos de desarrollo territorial

El partido de Tandil tiene una larga historia y tradición en la producción láctea y la elaboración de quesos. La actividad quesera en la zona comienza a mediados del siglo XIX. Tradicionales, locales y naturales son los significantes asociados a los quesos tandileros, cuyo saber hacer se ha trasmitido a través de generaciones. Desde fines de los ´90, en un contexto de crisis económica, se produce un nuevo impulso a la quesería, debido: a) a las dificultades que la crisis impuso a muchos tambos su reconversión a queseros; y b) al crecimiento de la demanda de productos artesanales causado, entre otros, por el desarrollo del turismo interno. La búsqueda de la valorización de la tipicidad de los productos de Tandil, se verifica en un conjunto de iniciativas promovidas por productores y actores locales (Denominación de Origen del Salame Tandilero, Marca “Producto tradicional Tandil”). En la construcción de la imagen y valorización del producto, interviene ciertamente la concepción de la calidad de los quesos. La calidad no es un elemento que pueda ser definido por criterios objetivos, sino que depende de las percepciones de los productores y otros actores, que se generan en relación y siempre en tensión, entre los atributos intrínsecos al alimento (sabor, aroma, color) y los atributos simbólicos. La finalidad de esta comunicación es indagar la manera en que se combinan los distintos niveles de construcción de una determinada noción de "calidad” aplicada a las queserías de base rural para poder reconocer las transformaciones que se producen en el territorio tandilense. Conceptualmente apoyaremos el análisis de caso en la corriente de pensamiento económico que propone el carácter endógeno de la calidad en la definición del producto agroalimentario. Esta noción se conoce por la teoría de las convenciones (TC) que hemos aplicado para caracterizar al universo de productores estudiados de Tandil. La metodología combinó técnicas propias de las ciencias exactas y las ciencias sociales y su triangulación. Se presentan los resultados de la idea de calidad, artesanalidad, tipicidad de los distintos tipos de productores y las tensiones resultantes entre las diferentes representaciones y las nociones normativas que las contextualizan.productos típicos, convenciones de calidad, valorización, Agribusiness, Agricultural and Food Policy, Community/Rural/Urban Development, Food Consumption/Nutrition/Food Safety, Labor and Human Capital,

Combined exercise effects on metabolic syndrome

Few randomized trials have examined the optimal mode of exercise or combination of modalities for specific cardiometabolic health benefits [1-3] . Therefore, questions remain unaddressed whether strength training or endurance training alone improves cardiometabolic health in overweight adults; whether a combination of both provides additional improvements [4, 5]

A semantic interoperability approach to support integration of gene expression and clinical data in breast cancer

[Abstract] Introduction. The introduction of omics data and advances in technologies involved in clinical treatment has led to a broad range of approaches to represent clinical information. Within this context, patient stratification across health institutions due to omic profiling presents a complex scenario to carry out multi-center clinical trials. Methods. This paper presents a standards-based approach to ensure semantic integration required to facilitate the analysis of clinico-genomic clinical trials. To ensure interoperability across different institutions, we have developed a Semantic Interoperability Layer (SIL) to facilitate homogeneous access to clinical and genetic information, based on different well-established biomedical standards and following International Health (IHE) recommendations. Results. The SIL has shown suitability for integrating biomedical knowledge and technologies to match the latest clinical advances in healthcare and the use of genomic information. This genomic data integration in the SIL has been tested with a diagnostic classifier tool that takes advantage of harmonized multi-center clinico-genomic data for training statistical predictive models. Conclusions. The SIL has been adopted in national and international research initiatives, such as the EURECA-EU research project and the CIMED collaborative Spanish project, where the proposed solution has been applied and evaluated by clinical experts focused on clinico-genomic studies.Instituto de Salud Carlos III, PI13/02020Instituto de Salud Carlos III, PI13/0028

Building a Robust, Densely-Sampled Spider Tree of Life for Ecosystem Research

Phylogenetic relatedness is a key diversity measure for the analysis and understanding of how species and communities evolve across time and space. Understanding the nonrandom loss of species with respect to phylogeny is also essential for better-informed conservation decisions. However, several factors are known to influence phylogenetic reconstruction and, ultimately, phylogenetic diversity metrics. In this study, we empirically tested how some of these factors (topological constraint, taxon sampling, genetic markers and calibration) affect phylogenetic resolution and uncertainty. We built a densely sampled, species-level phylogenetic tree for spiders, combining Sanger sequencing of species from local communities of two biogeographical regions (Iberian Peninsula and Macaronesia) with a taxon-rich backbone matrix of Genbank sequences and a topological constraint derived from recent phylogenomic studies. The resulting tree constitutes the most complete spider phylogeny to date, both in terms of terminals and background information, and may serve as a standard reference for the analysis of phylogenetic diversity patterns at the community level. We then used this tree to investigate how partial data affect phylogenetic reconstruction, phylogenetic diversity estimates and their rankings, and, ultimately, the ecological processes inferred for each community. We found that the incorporation of a single slowly evolving marker (28S) to the DNA barcode sequences from local communities, had the highest impact on tree topology, closely followed by the use of a backbone matrix. The increase in missing data resulting from combining partial sequences from local communities only had a moderate impact on the resulting trees, similar to the difference observed when using topological constraints. Our study further revealed substantial differences in both the phylogenetic structure and diversity rankings of the analyzed communities estimated from the different phylogenetic treatments, especially when using non-ultrametric trees (phylograms) instead of time-stamped trees (chronograms). Finally, we provide some recommendations on reconstructing phylogenetic trees to infer phylogenetic diversity within ecological studies